Of the 206 Japenese nationals evacuated from the Chinese city of Wuhan, four have been reported ill.
They will now undergo medical checks at a hospital designated for infectious diseases.
The remaining passengers will also under health checks before they are allowed to go home, officials added.
The first chartered flight from Wuhan, where the coronavirus was first detected, arrived in Tokyo on Wednesday.
So far, Japan has confirmed seven cases.
The death toll from the coronavirus, believed to have originated in a Wuhan market which illegally sold wildlife, rose sharply to 132 on Wednesday, with nearly 1,500 new cases.
Meanwhile, efforts are on to evacuate another 650 Japanese citizens, with Prime Minister Shinzo Abe setting up a special task force to deal with the epidemic.
The Israeli military ordered Palestinians to evacuate areas in northern Gaza on Sunday before intensified fighting against Hamas, as US President Donald Trump called for an end to the war amid renewed efforts to broker a ceasefire.
Russia used hundreds of drones, cruise and ballistic missiles to attack western, southern and central Ukraine overnight, damaging homes and infrastructure and injuring at least six people, local authorities said on Sunday.
At least seven Palestinians were killed and several others injured early Sunday in a series of Israeli airstrikes targeting Gaza City and Khan Younis in the southern Gaza Strip, Palestinian News & Information Agency (WAFA) reported.
The Republican-controlled US Senate narrowly advanced President Donald Trump's, sweeping tax-cut and spending bill on Saturday, during a marathon weekend session marked by political drama, division and lengthy delays as Democrats sought to slow the legislation's path to passage.